PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G125800.1
Common NameB456_007G125800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 433aa    MW: 48138.7 Da    PI: 5.0051
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G125800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.28.9e-24180237156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRla 56 
                         kpr++Wt+eLH+ Fv av++L G  +A+Pk+i   +++m+v  Lt+++++SHLQkYR++
  Gorai.007G125800.1 180 KPRMVWTQELHDLFVAAVNEL-GRGNAVPKKIlerMQAMNVTFLTRANIASHLQKYRMH 237
                         79*******************.9*********3333578999***************96 PP

2Response_reg73.77.2e-25111171107
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         +livdD+++ + +l+++l+k  y +v+ ++ ++eal+ll++ +  +D++l+D+ mp+++G+ell+ i+ e  +lp++++++ + +  + + 
  Gorai.007G125800.1  11 ILIVDDDRTCLLVLERMLRKFSY-QVTKCQLAREALALLRQDKnrFDIVLCDLHMPDINGFELLQIIEVEM-DLPVVMMSSDDGKGVVMKG 99 
                         8**********************.***************777778**********************8755.9****************** PP

                         HHTTESEEEESS--HHHH CS
        Response_reg  90 lkaGakdflsKpfdpeel 107
                         +  Ga d+l+Kp+ +e++
  Gorai.007G125800.1 100 IVHGACDYLVKPVRMEAI 117
                         ************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-378148No hitNo description
SuperFamilySSF521724.13E-338131IPR011006CheY-like superfamily
SMARTSM004481.2E-279121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.5210125IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-2211117IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.38E-2512117No hitNo description
PROSITE profilePS5129410.376177239IPR017930Myb domain
SuperFamilySSF466893.05E-17179240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-24179240IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-21180237IPR006447Myb domain, plants
PfamPF002492.5E-8182235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAGEFPAGLK ILIVDDDRTC LLVLERMLRK FSYQVTKCQL AREALALLRQ DKNRFDIVLC  60
DLHMPDINGF ELLQIIEVEM DLPVVMMSSD DGKGVVMKGI VHGACDYLVK PVRMEAIGLI  120
WQHVVRKKKK RFSGEITRSL PLQRADNAVP AMDKRSLKYR KRTSEDEDVA EDGESSEGKK  180
PRMVWTQELH DLFVAAVNEL GRGNAVPKKI LERMQAMNVT FLTRANIASH LQKYRMHLQK  240
EGAVPSSDSR DVNAYIDHRN LQFQPSPTTP YQLPMQNLIT ERANENILSI APSHVDGGSN  300
IFNSNIASES SCSLPTQVTL YDLYRANLLY QNDFPPISNG VAISNDNEFP PNDGVANSND  360
ESLYCNVVDG TELSNPFSAV AVDGTELSNP LSAVAVDGTE LSNPLSAVED LIHEPSFLVG  420
QYDQQAFFRG PI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16179240462ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490373.10.0PREDICTED: two-component response regulator ARR1-like isoform X1
SwissprotQ940D04e-82ARR1_ARATH; Two-component response regulator ARR1
TrEMBLA0A0D2SIU00.0A0A0D2SIU0_G
STRINGBra033527.1-P1e-82(Brassica rapa)
STRINGGLYMA15G15520.13e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2484834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-78response regulator 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]